[ Started: 2023-04-19 00:25:38 CEST ]
[ decoupleR v2.3.3 for BioC-3.17 from https://github.com/saezlab/decoupleR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-beta/lib/R/library"      
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 65 packages not available: matrixStats, RCurl, crayon, png, RSQLite, httr, xtable, DBI, XML, Rcpp, cpp11, BH, snow, futile.logger, rsvd, irlba, yaml, xml2, withr, tidyselect, tidyr, tibble, stringr, rvest, rmarkdown, rlang, readxl, readr, rappdirs, purrr, progress, magrittr, logger, later, jsonlite, igraph, dplyr, digest, curl, checkmate, BiocManager, knitr, bookdown, shiny, R.utils, mixtools, data.table, scales, fastmatch, cowplot, ggplot2, e1071, patchwork, ggrepel, Seurat, testthat, pheatmap, sessioninfo, roxygen2, RefManageR, pkgdown, covr, ranger, glmnet, broom
[ Finished: 2023-04-19 00:25:44 CEST ]