[ Started: 2024-03-28 13:10:42 CET ]
[ decoupleR v2.9.6 for BioC-3.19 from https://github.com/saezlab/decoupleR@master (68bf5f6 2024-03-24 13:38:34) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-03-23 r86179)
Old packages: 'cosmosR'
trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/cosmosR_1.11.0.tar.gz'
Content type 'application/x-gzip' length 3527905 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

* installing *source* package ‘cosmosR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmosR)

The downloaded source packages are in
	‘/tmp/RtmpzXa6pG/downloaded_packages’
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-03-23 r86179)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 37 packages ahead of CRAN: zlibbioc, XVector, SparseArray, S4Arrays, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, GenomeInfoDbData, GenomeInfoDb, DelayedArray, Biobase, GenomicRanges, Biostrings, KEGGREST, AnnotationDbi, graph, annotate, sparseMatrixStats, beachmat, ScaledMatrix, BiocParallel, Rhdf5lib, rhdf5filters, rhdf5, SummarizedExperiment, GSEABase, DelayedMatrixStats, BiocSingular, HDF5Array, SingleCellExperiment, OmnipathR, BiocStyle, AUCell, fgsea, viper, GSVA
[ Finished: 2024-03-28 13:10:54 CET ]