[ Started: 2024-04-04 18:38:31 CEST ]
[ decoupleR v2.9.7 for BioC-3.19 from https://github.com/saezlab/decoupleR@master (6ec5e92 2024-04-02 17:03:59) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-devel/lib/R/library"     
Bioconductor does not yet build and check packages for R version 4.5, using
  unsupported Bioconductor version 3.19; see https://bioconductor.org/install
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-04-01 r86264)
Old packages: 'cosmosR'
trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/cosmosR_1.11.0.tar.gz'
Content type 'application/x-gzip' length 3527905 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

* installing *source* package ‘cosmosR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmosR)

The downloaded source packages are in
	‘/tmp/RtmpaY2xnv/downloaded_packages’
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-04-01 r86264)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: htmltools
[ Finished: 2024-04-04 18:38:43 CEST ]