[ Started: 2024-05-06 16:09:48 CEST ] [ decoupleR v2.9.7 for BioC-3.19 from https://github.com/saezlab/decoupleR@master (8716d1a 2024-04-11 16:27:42) ] Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease Hit:2 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease Hit:3 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease Hit:5 http://security.ubuntu.com/ubuntu jammy-security InRelease Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-alpha/lib/R/library" Warning message: package ‘remotes’ was built under R version 4.5.0 Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (70.1-2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.16). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (3.0.2-0ubuntu1.15). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.9.2.1-3ubuntu2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.3-4.1build1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfontconfig1-dev is already the newest version (2.13.1-4.2ubuntu5). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfreetype6-dev is already the newest version (2.11.1+dfsg-1ubuntu0.2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfribidi-dev is already the newest version (1.0.8-2ubuntu3.1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libharfbuzz-dev is already the newest version (2.7.4-1ubuntu3.1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libjpeg-dev is already the newest version (8c-2ubuntu10). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libpng-dev is already the newest version (1.6.37-3build5). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libtiff-dev is already the newest version (4.3.0-6ubuntu0.8). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.4). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (5.0-1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... python3 is already the newest version (3.10.6-1~22.04). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu9.2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... imagemagick is already the newest version (8:6.9.11.60+dfsg-1.3ubuntu0.22.04.3). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libmagick++-dev is already the newest version (8:6.9.11.60+dfsg-1.3ubuntu0.22.04.3). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... gsfonts is already the newest version (1:8.11+urwcyr1.0.7~pre44-4.5). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. apt-get install -y libicu-dev apt-get install -y libcurl4-openssl-dev 0 0 apt-get install -y libssl-dev apt-get install -y pandoc 0 0 apt-get install -y make apt-get install -y libfontconfig1-dev 0 0 apt-get install -y libfreetype6-dev apt-get install -y libfribidi-dev 0 0 apt-get install -y libharfbuzz-dev apt-get install -y libjpeg-dev 0 0 apt-get install -y libpng-dev apt-get install -y libtiff-dev 0 0 apt-get install -y libxml2-dev apt-get install -y libglpk-dev 0 0 apt-get install -y python3 apt-get install -y zlib1g-dev 0 0 apt-get install -y imagemagick apt-get install -y libmagick++-dev 0 0 apt-get install -y gsfonts 0 [ Finished: 2024-05-06 16:10:00 CEST ]