[ Started: 2025-04-04 00:56:44 CEST ]
[ decoupleR v2.9.7 for BioC-3.21 from https://github.com/saezlab/decoupleR@devel (930b765 2025-02-15 00:00:59) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.21"
[3] "/home/omnipath/local/R/4.5"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Old packages: 'cosmosR'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/cosmosR_1.15.0.tar.gz'
Content type 'application/x-gzip' length 3528521 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

* installing *source* package ‘cosmosR’ ...
** this is package ‘cosmosR’ version ‘1.15.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmosR)

The downloaded source packages are in
	‘/tmp/RtmpgTAXg3/downloaded_packages’
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: OmnipathR
[ Finished: 2025-04-04 00:56:57 CEST ]