[ Started: 2026-10-21 20:21:47 CEST ]
[ decoupleR v2.9.7 for BioC-3.24 from https://github.com/saezlab/decoupleR@devel (930b765 2025-02-15 00:00:59) ]
[ R version 4.6.1 Patched (2026-10-12 r90666) -- "Happy Hop" at /opt/R-4.6-patched/bin ]

[1] "Libraries: "                      "/home/omnipath/local/R/4.6-3.24" 
[3] "/home/omnipath/local/R/4.6"       "/opt/R-4.6-patched/lib/R/library"
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 76 packages not available: abind, matrixStats, generics, crayon, png, RSQLite, httr, xtable, DBI, XML, Rcpp, cpp11, BH, snow, futile.logger, httr2, curl, filelock, dplyr, dbplyr, magick, rjson, zip, yaml, xml2, withr, vctrs, tidyselect, tidyr, tibble, stringr, stringi, sessioninfo, rvest, R.utils, rmarkdown, rlang, readxl, readr, rappdirs, purrr, progress, magrittr, lubridate, logger, later, jsonlite, igraph, fs, digest, checkmate, BiocManager, knitr, bookdown, mixtools, data.table, scales, fastmatch, cowplot, ggplot2, e1071, memuse, cli, patchwork, ggrepel, Seurat, testthat, pheatmap, roxygen2, RefManageR, pkgdown, covr, ranger, glmnet, parallelly, broom
[ Finished: 2026-10-21 20:30:54 CEST ]