[ Started: 2022-11-02 16:13:30 CET ] [ dorothea v1.8.0 for BioC-3.15 from https://github.com/saezlab/dorothea@RELEASE_3_15 ] Hit:1 http://de.archive.ubuntu.com/ubuntu focal InRelease Hit:2 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease Hit:3 http://ppa.launchpad.net/deadsnakes/ppa/ubuntu focal InRelease Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] Hit:5 http://de.archive.ubuntu.com/ubuntu focal-updates InRelease Hit:6 http://de.archive.ubuntu.com/ubuntu focal-backports InRelease Fetched 114 kB in 1s (115 kB/s) Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.2-3.15" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" Warning message: package ‘BiocCheck’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (66.1-2ubuntu2.1). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.5-3build2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.2.1-1.2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.68.0-1ubuntu2.14). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (1.1.1f-1ubuntu2.16). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfontconfig1-dev is already the newest version (2.13.1-2ubuntu3). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfreetype6-dev is already the newest version (2.10.1-2ubuntu0.2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfribidi-dev is already the newest version (1.0.8-2ubuntu0.1). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libharfbuzz-dev is already the newest version (2.6.4-1ubuntu4.2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libjpeg-dev is already the newest version (8c-2ubuntu8). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libpng-dev is already the newest version (1.6.37-2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.5). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.4). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (4.65-2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgmp3-dev is already the newest version (2:6.2.0+dfsg-4ubuntu0.1). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... python3 is already the newest version (3.8.2-0ubuntu2). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu1.5). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgeos-dev is already the newest version (3.8.0-1build1). 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. apt-get install -y libicu-dev apt-get install -y pandoc 0 0 apt-get install -y make apt-get install -y libcurl4-openssl-dev 0 0 apt-get install -y libssl-dev apt-get install -y libfontconfig1-dev 0 0 apt-get install -y libfreetype6-dev apt-get install -y libfribidi-dev 0 0 apt-get install -y libharfbuzz-dev apt-get install -y libjpeg-dev 0 0 apt-get install -y libpng-dev apt-get install -y libtiff-dev 0 0 apt-get install -y libxml2-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libgmp3-dev apt-get install -y python3 0 0 apt-get install -y zlib1g-dev apt-get install -y libgeos-dev 0 0 [ Finished: 2022-11-02 16:13:43 CET ]