[ Started: 2022-11-15 01:11:31 CET ] [ dorothea v1.7.2 for BioC-3.16 from https://github.com/saezlab/dorothea@master ] Loading required package: BiocCheck ─ BiocCheckVersion: 1.34.0 ─ BiocVersion: 3.16 ─ Package: dorothea ─ PackageVersion: 1.7.2 ─ sourceDir: /tmp/RtmpS4bt8i/fileb808c6d2b5191/dorothea ─ installDir: /tmp/RtmpS4bt8i/fileb808c471ac76d ─ BiocCheckDir: /home/omnipath/testing/dorothea/bioc-3.16/2022-11-15_0110/dorothea/dorothea.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed * Checking version number... * Checking for version number mismatch... * Checking version number validity... * WARNING: y of x.y.z version should be even in release * Checking R version dependency... * NOTE: Update R version dependency from 4.0 to 4.2.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... ExperimentData * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * Checking License: for restrictive use... * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * NOTE: 'sessionInfo' not found in vignette(s) * Checking package installation calls in R code... * Checking for library/require of dorothea... * Checking coding practice... * NOTE: Avoid using '=' for assignment and use '<-' instead * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * Checking man page documentation... * Checking package NEWS... * Checking unit tests... * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 8 lines (1%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 117 lines (16%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cloud.r-project.org * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package name is in support site watched tags. ─ BiocCheck results ── 0 ERRORS | 1 WARNINGS | 7 NOTES See the dorothea.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details. [ Finished: 2022-11-15 01:12:13 CET ]