[ Started: 2023-04-24 00:31:40 CEST ] [ dorothea v1.7.3 for BioC-3.17 from https://github.com/saezlab/dorothea@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 38 packages not available: matrixStats, RCurl, e1071, mixtools, yaml, xml2, withr, tidyselect, tidyr, tibble, stringr, rvest, rmarkdown, rlang, readxl, readr, rappdirs, purrr, progress, magrittr, logger, later, jsonlite, igraph, httr, dplyr, digest, curl, crayon, checkmate, BiocManager, knitr, bookdown, broom, testthat, Seurat, pkgdown, pheatmap [ Finished: 2023-04-24 00:31:46 CEST ]