[ Started: 2023-11-28 12:40:01 CET ]
[ dorothea v1.7.3 for BioC-3.17 from https://github.com/saezlab/dorothea@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.17' is out-of-date; the current release version '3.18'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Old packages: 'dotCall64'
trying URL 'https://cloud.r-project.org/src/contrib/dotCall64_1.1-1.tar.gz'
Content type 'application/x-gzip' length 20443 bytes (19 KB)
==================================================
downloaded 19 KB

* installing *source* package ‘dotCall64’ ...
** package ‘dotCall64’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/usr/share/R/include" -DNDEBUG      -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dotCall64.c -o dotCall64.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dotCall64helpers.c -o dotCall64helpers.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fopenmp -I../inst/include/ -DDOTCAL64_PRIVATE -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c testfunctions_c.c -o testfunctions_c.o
gfortran  -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong  -c testfunctions_f.f -o testfunctions_f.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o dotCall64.so dotCall64.o dotCall64helpers.o init.o testfunctions_c.o testfunctions_f.o -fopenmp -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-dotCall64/00new/dotCall64/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dotCall64)

The downloaded source packages are in
	‘/tmp/Rtmp8J6emq/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 2 packages ahead of CRAN: scales, dotCall64
[ Finished: 2023-11-28 12:40:13 CET ]