[ Started: 2023-10-29 12:33:19 CET ]
[ dorothea v1.7.3 for BioC-3.18 from https://github.com/saezlab/dorothea@master ]

* using log directory ‘/mnt/disk0/build/bioc-check/dorothea/bioc-3.18/2023-10-29_1226/dorothea/dorothea.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘dorothea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dorothea’ version ‘1.7.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dorothea’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 35.6Mb
  sub-directories of 1Mb or more:
    data       5.0Mb
    doc        2.3Mb
    extdata   17.3Mb
    help       1.3Mb
    testdata   9.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  > library(testthat)
  > library(dorothea)
  > 
  > test_check("dorothea")
  [ FAIL 1 | WARN 8 | SKIP 0 | PASS 18 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-viper_wrapper.R:95:3'): test run_viper with seurat as input ──
  unname(Seurat::Key(res)) not equal to c("rna_", "dorothea_").
  Lengths differ: 3 is not 2
  
  [ FAIL 1 | WARN 8 | SKIP 0 | PASS 18 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘ggplot2’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘dorothea.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/mnt/disk0/build/bioc-check/dorothea/bioc-3.18/2023-10-29_1226/dorothea/dorothea.Rcheck/00check.log’
for details.

[ Finished: 2023-10-29 12:40:27 CET ]