[ Started: 2023-12-06 12:46:32 CET ]
[ dorothea v1.7.3 for BioC-3.18 from https://github.com/saezlab/dorothea@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Old packages: 'progress'
trying URL 'https://cloud.r-project.org/src/contrib/progress_1.2.3.tar.gz'
Content type 'application/x-gzip' length 30499 bytes (29 KB)
==================================================
downloaded 29 KB

* installing *source* package ‘progress’ ...
** package ‘progress’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (progress)

The downloaded source packages are in
	‘/tmp/RtmpeoPqdu/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 6 packages ahead of CRAN: sass, later, httpuv, htmlwidgets, progress, e1071
[ Finished: 2023-12-06 12:46:40 CET ]