[ Started: 2024-02-02 12:25:04 CET ] [ dorothea v1.7.3 for BioC-3.18 from https://github.com/saezlab/dorothea@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.18" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Old packages: 'gplots' trying URL 'https://cloud.r-project.org/src/contrib/gplots_3.1.3.1.tar.gz' Content type 'application/x-gzip' length 520586 bytes (508 KB) ================================================== downloaded 508 KB * installing *source* package ‘gplots’ ... ** package ‘gplots’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gplots) The downloaded source packages are in ‘/tmp/RtmpmaDFOw/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: gplots [ Finished: 2024-02-02 12:25:15 CET ]