[ Started: 2024-04-02 20:33:36 CEST ]
[ dorothea v1.7.4 for BioC-3.18 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29)
Old packages: 'shiny'
trying URL 'https://cloud.r-project.org/src/contrib/shiny_1.8.1.1.tar.gz'
Content type 'application/x-gzip' length 3049516 bytes (2.9 MB)
==================================================
downloaded 2.9 MB

* installing *source* package ‘shiny’ ...
** package ‘shiny’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shiny)

The downloaded source packages are in
	‘/tmp/RtmpLdukdF/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 20 packages ahead of CRAN: S4Arrays, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, GenomeInfoDbData, zlibbioc, XVector, GenomeInfoDb, DelayedArray, Biobase, GenomicRanges, shiny, SummarizedExperiment, SingleCellExperiment, viper, OmnipathR, BiocStyle, decoupleR, bcellViper
[ Finished: 2024-04-02 20:34:03 CEST ]