[ Started: 2024-03-24 13:38:14 CET ]
[ dorothea v1.7.4 for BioC-3.19 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-03-23 r86179)
Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable)
  (2024-03-23 r86179)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
decoupleR (ea4ecbb11... -> 68bf5f61d...) [GitHub]
Skipping 18 packages ahead of CRAN: zlibbioc, XVector, SparseArray, S4Arrays, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, GenomeInfoDb, DelayedArray, Biobase, GenomicRanges, SummarizedExperiment, SingleCellExperiment, viper, OmnipathR, BiocStyle, bcellViper
Downloading GitHub repo saezlab/decoupleR@HEAD
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Skipping 1 packages ahead of CRAN: BiocParallel
── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/RtmpIFWoLv/remotes2171c9799e047f/saezlab-decoupleR-68bf5f6/DESCRIPTION’ ... OK
* preparing ‘decoupleR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘decoupleR_2.9.6.tar.gz’

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
[ Finished: 2024-03-24 13:38:28 CET ]