[ Started: 2024-04-02 20:28:26 CEST ] [ dorothea v1.7.4 for BioC-3.19 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-devel/lib/R/library" Bioconductor does not yet build and check packages for R version 4.5, using unsupported Bioconductor version 3.19; see https://bioconductor.org/install Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) (2024-04-01 r86264) Old packages: 'shiny' trying URL 'https://cloud.r-project.org/src/contrib/shiny_1.8.1.1.tar.gz' Content type 'application/x-gzip' length 3049516 bytes (2.9 MB) ================================================== downloaded 2.9 MB * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) The downloaded source packages are in ‘/tmp/RtmpO5joJu/downloaded_packages’ Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) (2024-04-01 r86264) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: shiny [ Finished: 2024-04-02 20:28:48 CEST ]