[ Started: 2024-11-23 13:12:20 CET ]
[ dorothea v1.16.0 for BioC-3.19 from https://git.bioconductor.org/packages/dorothea@RELEASE_3_19 (2ec02fd 2024-04-30 11:07:06) ]

Loading required package: BiocCheck
─ BiocCheckVersion: 1.40.0
─ BiocVersion: 3.19
─ Package: dorothea
─ PackageVersion: 1.16.0
─ sourceDir: /tmp/RtmpxiNOy4/file149cea4a92d3a/dorothea
─ installDir: /tmp/RtmpxiNOy4/file149cea51c156dc
─ BiocCheckDir: /mnt/disk0/build/bioc-check/dorothea/bioc-3.19/2024-11-23_1303/dorothea/dorothea.BiocCheck
─ platform: unix
─ isTarBall: TRUE

* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
    * NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or
      removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
    * NOTE: Update R version dependency from 4.0 to 4.4.0.
* Checking package size...
* Checking individual file sizes...
    * WARNING: Package files exceed the 5MB size limit.
    * WARNING: Data files exceed the 5MB size limit.
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    ExperimentData
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
    Bioconductor dependencies found in Imports & Depends (25%).
* Checking for pinned package versions in DESCRIPTION...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
    * NOTE: 'sessionInfo' not found in vignette(s)
* Checking package installation calls in R code...
* Checking for library/require of dorothea...
* Checking coding practice...
    * NOTE: Avoid using '=' for assignment and use '<-' instead
    * WARNING: .Deprecated / .Defunct usage (found 1 times)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
    * WARNING: Empty or missing \value sections found in man page(s).
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 12 lines (2%) are > 80 characters
      long.
    * NOTE: Consider multiples of 4 spaces for line indents; 104 lines
      (19%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer is registered at support site.
    * ERROR: Add package to Watched Tags in your Support Site profile;
      visit https://support.bioconductor.org/accounts/edit/profile

─ BiocCheck results ──
1 ERRORS | 4 WARNINGS | 7 NOTES

See the dorothea.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.
[ Finished: 2024-11-23 13:13:03 CET ]