[ Started: 2025-07-13 19:34:22 CEST ] [ dorothea v1.20.0 for BioC-3.21 from https://git.bioconductor.org/packages/dorothea@RELEASE_3_21 (109bfa1 2025-04-15 10:14:54) ] * checking for file ‘./DESCRIPTION’ ... OK * preparing ‘dorothea’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dorothea.Rmd’ using rmarkdown Quitting from dorothea.Rmd:66-69 [model] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `dyn.load()`: ! unable to load shared object '/home/omnipath/local/R/4.5-3.21/igraph/libs/igraph.so': libRblas.so: cannot open shared object file: No such file or directory --- Backtrace: ▆ 1. └─decoupleR::get_dorothea(levels = c("A", "B", "C", "D")) 2. └─decoupleR:::omnipathr_disable_doctest_bypass() 3. └─base::loadNamespace("OmnipathR") 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. └─base::library.dynam(lib, package, package.lib) 8. └─base::dyn.load(file, DLLpath = DLLpath, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'dorothea.Rmd' failed with diagnostics: unable to load shared object '/home/omnipath/local/R/4.5-3.21/igraph/libs/igraph.so': libRblas.so: cannot open shared object file: No such file or directory --- failed re-building ‘dorothea.Rmd’ SUMMARY: processing the following file failed: ‘dorothea.Rmd’ Error: Vignette re-building failed. Execution halted [ Finished: 2025-07-13 19:34:56 CEST ]