[ Started: 2025-07-26 19:21:36 CEST ]
[ dorothea v1.7.4 for BioC-3.22 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 19 packages ahead of CRAN: XVector, SparseArray, S4Arrays, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, UCSC.utils, GenomeInfoDb, DelayedArray, Biobase, GenomicRanges, SummarizedExperiment, BiocParallel, SingleCellExperiment, viper, BiocStyle, decoupleR, bcellViper
[ Finished: 2025-07-26 19:21:43 CEST ]