[ Started: 2025-07-30 19:52:48 CEST ]
[ dorothea v1.7.4 for BioC-3.22 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Old packages: 'decoupleR'
trying URL 'https://bioconductor.org/packages/3.22/bioc/src/contrib/decoupleR_2.15.0.tar.gz'
Content type 'application/x-gzip' length 5248487 bytes (5.0 MB)
==================================================
downloaded 5.0 MB

* installing *source* package ‘decoupleR’ ...
** this is package ‘decoupleR’ version ‘2.15.0’
** package ‘decoupleR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)

The downloaded source packages are in
	‘/tmp/RtmpaLDHFf/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 20 packages ahead of CRAN: XVector, SparseArray, S4Arrays, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, UCSC.utils, GenomeInfoDb, DelayedArray, Biobase, GenomicRanges, SummarizedExperiment, BiocParallel, SingleCellExperiment, viper, OmnipathR, BiocStyle, decoupleR, bcellViper
[ Finished: 2025-07-30 19:53:01 CEST ]