[ Started: 2026-10-26 19:18:19 CET ]
[ dorothea v1.7.4 for BioC-3.24 from https://github.com/saezlab/dorothea@master (1461fb7 2024-02-24 12:55:48) ]
[ R version 4.6.1 Patched (2026-10-12 r90666) -- "Happy Hop" at /opt/R-4.6-patched/bin ]

[1] "Libraries: "                      "/home/omnipath/local/R/4.6-3.24" 
[3] "/home/omnipath/local/R/4.6"       "/opt/R-4.6-patched/lib/R/library"
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Old packages: 'scater'
trying URL 'https://bioconductor.org/packages/3.24/bioc/src/contrib/scater_1.41.3.tar.gz'
Content type 'application/gzip' length 4559610 bytes (4.3 MB)
==================================================
downloaded 4.3 MB

* installing *source* package ‘scater’ ...
** this is package ‘scater’ version ‘1.41.3’
** package ‘scater’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scater)

The downloaded source packages are in
	‘/tmp/RtmpJZ45DB/downloaded_packages’
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: OmnipathR
[ Finished: 2026-10-26 19:18:55 CET ]