[ Started: 2022-10-25 20:16:44 CEST ] [ liana v0.1.7 for BioC-3.16 from https://github.com/saezlab/liana@master ] Hit:1 http://de.archive.ubuntu.com/ubuntu focal InRelease Hit:2 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease Hit:3 http://ppa.launchpad.net/deadsnakes/ppa/ubuntu focal InRelease Hit:4 http://de.archive.ubuntu.com/ubuntu focal-updates InRelease Hit:5 http://de.archive.ubuntu.com/ubuntu focal-backports InRelease Hit:6 http://security.ubuntu.com/ubuntu focal-security InRelease Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.2-3.16" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" Reading package lists... Building dependency tree... Reading state information... libpng-dev is already the newest version (1.6.37-2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... python3 is already the newest version (3.8.2-0ubuntu2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (66.1-2ubuntu2.1). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgeos-dev is already the newest version (3.8.0-1build1). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.5-3build2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.2.1-1.2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.68.0-1ubuntu2.13). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (1.1.1f-1ubuntu2.16). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (4.65-2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgmp3-dev is already the newest version (2:6.2.0+dfsg-4ubuntu0.1). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.4). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu1.5). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfontconfig1-dev is already the newest version (2.13.1-2ubuntu3). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfreetype6-dev is already the newest version (2.10.1-2ubuntu0.2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libfribidi-dev is already the newest version (1.0.8-2ubuntu0.1). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libharfbuzz-dev is already the newest version (2.6.4-1ubuntu4.2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libjpeg-dev is already the newest version (8c-2ubuntu8). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.5). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... git is already the newest version (1:2.25.1-1ubuntu3.6). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgit2-dev is already the newest version (0.28.4+dfsg.1-2). 0 to upgrade, 0 to newly install, 0 to remove and 11 not to upgrade. apt-get install -y libpng-dev apt-get install -y python3 0 0 apt-get install -y libicu-dev apt-get install -y libgeos-dev 0 0 apt-get install -y pandoc apt-get install -y make 0 0 apt-get install -y libcurl4-openssl-dev apt-get install -y libssl-dev 0 0 apt-get install -y libglpk-dev apt-get install -y libgmp3-dev 0 0 apt-get install -y libxml2-dev apt-get install -y zlib1g-dev 0 0 apt-get install -y libfontconfig1-dev apt-get install -y libfreetype6-dev 0 0 apt-get install -y libfribidi-dev apt-get install -y libharfbuzz-dev 0 0 apt-get install -y libjpeg-dev apt-get install -y libtiff-dev 0 0 apt-get install -y git apt-get install -y libgit2-dev 0 0 [ Finished: 2022-10-25 20:16:58 CEST ]