[ Started: 2023-04-03 12:35:08 CEST ] [ liana v0.1.12 for BioC-3.17 from https://github.com/saezlab/liana@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Bioconductor version 3.17 (BiocManager 1.30.20), R Under development (unstable) (2023-03-16 r83996) Old packages: 'ranger' trying URL 'https://cloud.r-project.org/src/contrib/ranger_0.15.1.tar.gz' Content type 'application/x-gzip' length 162164 bytes (158 KB) ================================================== downloaded 158 KB * installing *source* package ‘ranger’ ... ** package ‘ranger’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Data.cpp -o Data.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c DataSparse.cpp -o DataSparse.o In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:31, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Forest.cpp -o Forest.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestClassification.cpp -o ForestClassification.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestProbability.cpp -o ForestProbability.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestRegression.cpp -o ForestRegression.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestSurvival.cpp -o ForestSurvival.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:31, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenWrap.h:432:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenWrap.h:432:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:90:53: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenWrap.h:432:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.17/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Tree.cpp -o Tree.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeClassification.cpp -o TreeClassification.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeProbability.cpp -o TreeProbability.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeRegression.cpp -o TreeRegression.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeSurvival.cpp -o TreeSurvival.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c rangerCpp.cpp -o rangerCpp.o In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:31, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigenForward.h:30, from /home/omnipath/local/R/4.3-3.17/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.17/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c utility.cpp -o utility.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c utilityRcpp.cpp -o utilityRcpp.o g++ -std=gnu++17 -shared -L/usr/local/lib -o ranger.so AAA_check_cpp11.o Data.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o rangerCpp.o utility.o utilityRcpp.o installing to /home/omnipath/local/R/4.3-3.17/00LOCK-ranger/00new/ranger/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ranger) The downloaded source packages are in ‘/tmp/Rtmp0CDvZD/downloaded_packages’ Bioconductor version 3.17 (BiocManager 1.30.20), R Under development (unstable) (2023-03-16 r83996) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' CellChat (NA -> 3c6e8d602...) [GitHub] decoupleR (2.5.0 -> bcd2da7ef...) [GitHub] Skipping 71 packages not available: matrixStats, RCurl, crayon, png, DT, shiny, filelock, DBI, dbplyr, dplyr, yaml, httr, curl, RSQLite, rappdirs, BiocManager, Rcpp, cpp11, BH, snow, futile.logger, irlba, reticulate, assertthat, rsvd, RcppHNSW, igraph, locfit, withr, tidyselect, tidyr, tibble, stringr, rlang, purrr, magrittr, broom, rmarkdown, knitr, bookdown, doParallel, foreach, digest, GlobalOptions, RColorBrewer, clue, colorspace, GetoptLong, circlize, ggrastr, ggrepel, pheatmap, uwot, RcppML, Rtsne, viridis, ggbeeswarm, ggplot2, dqrng, statmod, devtools, tidyverse, future, furrr, entropy, Seurat, sessioninfo, testthat, markdown, SeuratObject, readr Downloading GitHub repo sqjin/CellChat@HEAD Skipping 36 packages not available: RcppEigen, Rcpp, BiocNeighbors, ggnetwork, ggpubr, plyr, colorspace, patchwork, magrittr, BiocGenerics, shape, FNN, reshape2, forcats, sna, scales, reticulate, RSpectra, ComplexHeatmap, cowplot, RColorBrewer, circlize, ggrepel, Rtsne, expm, svglite, stringr, ggalluvial, NMF, irlba, pbapply, future.apply, future, ggplot2, igraph, dplyr ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/Rtmp0CDvZD/remotes2afadf69cc5b08/sqjin-CellChat-3c6e8d6/DESCRIPTION’ ... OK * preparing ‘CellChat’: * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘CellChat_1.6.1.tar.gz’ ERROR: dependency ‘ggpubr’ is not available for package ‘CellChat’ * removing ‘/home/omnipath/local/R/4.3-3.17/CellChat’ Downloading GitHub repo sqjin/CellChat@HEAD Skipping 36 packages not available: RcppEigen, Rcpp, BiocNeighbors, ggnetwork, ggpubr, plyr, colorspace, patchwork, magrittr, BiocGenerics, shape, FNN, reshape2, forcats, sna, scales, reticulate, RSpectra, ComplexHeatmap, cowplot, RColorBrewer, circlize, ggrepel, Rtsne, expm, svglite, stringr, ggalluvial, NMF, irlba, pbapply, future.apply, future, ggplot2, igraph, dplyr ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/Rtmp0CDvZD/remotes2afadf5478446e/sqjin-CellChat-3c6e8d6/DESCRIPTION’ ... OK * preparing ‘CellChat’: * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘CellChat_1.6.1.tar.gz’ ERROR: dependency ‘ggpubr’ is not available for package ‘CellChat’ * removing ‘/home/omnipath/local/R/4.3-3.17/CellChat’ Downloading GitHub repo saezlab/decoupleR@HEAD Skipping 10 packages not available: withr, tidyselect, tidyr, tibble, stringr, rlang, purrr, magrittr, dplyr, broom ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/Rtmp0CDvZD/remotes2afadf6ce295af/saezlab-decoupleR-bcd2da7/DESCRIPTION’ ... OK * preparing ‘decoupleR’: * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories Omitted ‘LazyData’ from DESCRIPTION * building ‘decoupleR_2.3.3.tar.gz’ * installing *source* package ‘decoupleR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (decoupleR) Warning messages: 1: In i.p(...) : installation of package ‘/tmp/Rtmp0CDvZD/file2afadf78cf487/CellChat_1.6.1.tar.gz’ had non-zero exit status 2: In i.p(...) : installation of package ‘/tmp/Rtmp0CDvZD/file2afadfc7cbe16/CellChat_1.6.1.tar.gz’ had non-zero exit status [ Finished: 2023-04-03 12:36:28 CEST ]