[ Started: 2023-12-27 12:52:40 CET ]
[ liana v0.1.13 for BioC-3.18 from https://github.com/saezlab/liana@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
OmnipathR (4b83e3ce4... -> f8747b3eb...) [GitHub]
Downloading GitHub repo saezlab/OmnipathR@HEAD

── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/RtmpWDbixZ/remotes238fa1ba62d9a/saezlab-OmnipathR-f8747b3/DESCRIPTION’ ... OK
* preparing ‘OmnipathR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘OmnipathR_3.11.1.tar.gz’

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called ‘metaboliteIDmapping’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘OmnipathR’
* removing ‘/home/omnipath/local/R/4.3-3.18/OmnipathR’
* restoring previous ‘/home/omnipath/local/R/4.3-3.18/OmnipathR’
Warning message:
In i.p(...) :
  installation of package ‘/tmp/RtmpWDbixZ/file238fa75250119/OmnipathR_3.11.1.tar.gz’ had non-zero exit status
[ Finished: 2023-12-27 12:52:52 CET ]