[ Started: 2024-01-18 12:56:38 CET ] [ liana v0.1.13 for BioC-3.18 from https://github.com/saezlab/liana@master ] * checking for file ‘./DESCRIPTION’ ... OK * preparing ‘liana’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘liana_cc2tensor.Rmd’ using rmarkdown [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Contains 1 files. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-01-18 12:58:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-01-18 12:58:17] [TRACE] [OmnipathR] Cache locked: FALSE 0%| | 0/16 [00:00