[ Started: 2024-10-29 13:29:16 CET ]
[ MetaProViz v2.1.1 for BioC-3.20 from https://github.com/saezlab/MetaProViz@development (9a9b4f8 2024-10-29 12:04:32) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Old packages: 'decoupleR'
trying URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/decoupleR_2.11.0.tar.gz'
Content type 'application/x-gzip' length 5236405 bytes (5.0 MB)
==================================================
downloaded 5.0 MB

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)

The downloaded source packages are in
	‘/tmp/RtmpBI5UlI/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
Error: Command failed (128)
In addition: Warning message:
In system(full, intern = TRUE, ignore.stderr = quiet) :
  running command ''/usr/bin/git' ls-remote https://code.bioconductor.org/packages/limma.git  2>/dev/null' had status 128
Execution halted
[ Finished: 2024-10-29 13:29:32 CET ]