ridge (NA -> 3.3) [CRAN]
Installing 1 packages: ridge
trying URL 'https://cloud.r-project.org/src/contrib/ridge_3.3.tar.gz'
Content type 'application/x-gzip' length 144986 bytes (141 KB)
==================================================
downloaded 141 KB

* installing *source* package ‘ridge’ ...
** package ‘ridge’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... unsupported
checking for gcc option to enable C99 features... none needed
checking for gsl-config... /usr/bin/gsl-config
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gsl/gsl_version.h... yes
configure: creating ./config.status
config.status: creating R/linearRidgeGenotypes.R
config.status: creating R/linearRidgeGenotypesPredict.R
config.status: creating R/logisticRidgeGenotypes.R
config.status: creating R/logisticRidgeGenotypesPredict.R
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c ReadInData.c -o ReadInData.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c commonFunctions.c -o commonFunctions.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c computeLinearRidge.c -o computeLinearRidge.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c computePvals.c -o computePvals.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c coordinateDescent.c -o coordinateDescent.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c linear.c -o linear.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c linearFunctions.c -o linearFunctions.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c logistic.c -o logistic.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c logisticFunctions.c -o logisticFunctions.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c registration.c -o registration.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c regression_wrapper_function.c -o regression_wrapper_function.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c ridgeRegressionFunctions.c -o ridgeRegressionFunctions.o
gcc -I"/opt/R-rc/lib/R/include" -DNDEBUG -I/usr/include -I.  -I/usr/local/include   -fpic  -std=gnu99 -Wall -pedantic  -c thin.c -o thin.o
gcc -shared -L/opt/R-rc/lib/R/lib -L/usr/local/lib -o ridge.so ReadInData.o commonFunctions.o computeLinearRidge.o computePvals.o coordinateDescent.o linear.o linearFunctions.o logistic.o logisticFunctions.o registration.o regression_wrapper_function.o ridgeRegressionFunctions.o thin.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/opt/R-rc/lib/R/lib -lR
installing to /home/omnipath/local/R/00LOCK-ridge/00new/ridge/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ridge)

The downloaded source packages are in
	‘/tmp/RtmpXsy39A/downloaded_packages’