[ Started: 2022-12-05 01:17:26 CET ] [ mistyR v1.6.0 for BioC-3.16 from https://github.com/saezlab/mistyR@master ] Loading required package: BiocCheck ─ BiocCheckVersion: 1.34.2 ─ BiocVersion: 3.16 ─ Package: mistyR ─ PackageVersion: 1.6.0 ─ sourceDir: /tmp/RtmpCQ9Uy6/file1f87f37bb802c/mistyR ─ installDir: /tmp/RtmpCQ9Uy6/file1f87f37868fe17 ─ BiocCheckDir: /home/omnipath/testing/mistyr/bioc-3.16/2022-12-05_0115/mistyR/mistyR.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * NOTE: Update R version dependency from 4.0 to 4.2.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * Checking License: for restrictive use... * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * Checking package installation calls in R code... * Checking for library/require of mistyR... * Checking coding practice... * NOTE: Avoid 1:...; use seq_len() or seq_along() * NOTE: Avoid 'cat' and 'print' outside of 'show' methods * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * NOTE: The recommended function length is 50 lines or less. There are 66 functions greater than 50 lines. * Checking man page documentation... * Checking package NEWS... * Checking unit tests... * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... Error in .rmYAMLfm(lines) : More than 2 YAML front matter delimiters, i.e., '---' found Calls: BiocCheck -> BiocCheckRun -> checkFormatting -> .rmYAMLfm Execution halted [ Finished: 2022-12-05 01:17:38 CET ]