[ Started: 2023-04-30 00:23:36 CEST ]
[ mistyR v1.9.0 for BioC-3.17 from https://github.com/saezlab/mistyR@devel ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21)
Old packages: 'basilisk', 'basilisk.utils', 'decoupleR', 'ggbeeswarm'
trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/basilisk_1.12.0.tar.gz'
Content type 'application/x-gzip' length 267174 bytes (260 KB)
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downloaded 260 KB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/basilisk.utils_1.12.0.tar.gz'
Content type 'application/x-gzip' length 240019 bytes (234 KB)
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downloaded 234 KB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/decoupleR_2.6.0.tar.gz'
Content type 'application/x-gzip' length 4329686 bytes (4.1 MB)
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downloaded 4.1 MB

trying URL 'https://cloud.r-project.org/src/contrib/ggbeeswarm_0.7.2.tar.gz'
Content type 'application/x-gzip' length 1718982 bytes (1.6 MB)
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downloaded 1.6 MB

* installing *source* package ‘basilisk.utils’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (basilisk.utils)
* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
* installing *source* package ‘ggbeeswarm’ ...
** package ‘ggbeeswarm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggbeeswarm)
* installing *source* package ‘basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)

The downloaded source packages are in
	‘/tmp/Rtmply8Aud/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 35 packages not available: BiocManager, yaml, rmarkdown, knitr, bookdown, xgboost, testthat, RSNNS, kernlab, iml, igraph, future, earth, covr, withr, tidyselect, tidyr, tibble, stringr, R.utils, rlist, rlang, ridge, readr, ranger, purrr, ggplot2, furrr, filelock, dplyr, distances, digest, deldir, caret, assertthat
[ Finished: 2023-04-30 00:23:55 CEST ]