[ Started: 2024-04-29 17:21:44 CEST ]
[ mistyR v1.10.0 for BioC-3.19 from https://github.com/saezlab/mistyR@master (8bb8ba9 2024-03-25 14:10:38) ]

Hit:1 http://security.ubuntu.com/ubuntu jammy-security InRelease
Hit:2 http://de.archive.ubuntu.com/ubuntu jammy InRelease
Hit:3 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease
Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease
Hit:5 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease
Reading package lists...
[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-alpha/lib/R/library"     
Warning message:
package ‘remotes’ was built under R version 4.5.0 
Reading package lists...
Building dependency tree...
Reading state information...
libicu-dev is already the newest version (70.1-2).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgsl-dev is already the newest version (2.7.1+dfsg-3).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.4).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.16).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libssl-dev is already the newest version (3.0.2-0ubuntu1.15).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libglpk-dev is already the newest version (5.0-1).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
pandoc is already the newest version (2.9.2.1-3ubuntu2).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
make is already the newest version (4.3-4.1build1).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
          apt-get install -y libicu-dev          apt-get install -y libgsl0-dev 
                                      0                                       0 
         apt-get install -y libxml2-dev apt-get install -y libcurl4-openssl-dev 
                                      0                                       0 
          apt-get install -y libssl-dev          apt-get install -y libglpk-dev 
                                      0                                       0 
              apt-get install -y pandoc                 apt-get install -y make 
                                      0                                       0 
[ Finished: 2024-04-29 17:21:50 CEST ]