[ Started: 2024-11-01 13:41:26 CET ] [ mistyR v1.12.0 for BioC-3.19 from https://git.bioconductor.org/packages/mistyR@RELEASE_3_19 (6c9d2ca 2024-04-30 11:35:00) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/usr/lib/R/library" Bioconductor version '3.19' is out-of-date; the current release version '3.20' is available with R version '4.4'; see https://bioconductor.org/install 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.19 (BiocManager 1.30.25), R 4.4.1 (2024-06-14) 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.19 (BiocManager 1.30.25), R 4.4.1 (2024-06-14) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: BiocStyle [ Finished: 2024-11-01 13:41:34 CET ]