[ Started: 2025-04-17 23:42:49 CEST ] [ mistyR v1.14.0 for BioC-3.20 from https://git.bioconductor.org/packages/mistyR@RELEASE_3_20 (b65acaa 2024-10-29 11:00:49) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.20" [3] "/home/omnipath/local/R/4.4" "/usr/lib/R/library" Bioconductor version '3.20' is out-of-date; the current release version '3.21' is available with R version '4.5'; see https://bioconductor.org/install 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14) 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 2 packages ahead of CRAN: recipes, BiocStyle [ Finished: 2025-04-17 23:42:58 CEST ]