[ Started: 2025-03-22 01:05:14 CET ]
[ mistyR v1.10.0 for BioC-3.21 from https://github.com/saezlab/mistyR@master (8bb8ba9 2024-03-25 14:10:38) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.21"
[3] "/home/omnipath/local/R/4.5"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Old packages: 'cosmosR'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/cosmosR_1.15.0.tar.gz'
Content type 'application/x-gzip' length 3528521 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

* installing *source* package ‘cosmosR’ ...
** this is package ‘cosmosR’ version ‘1.15.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cosmosR)

The downloaded source packages are in
	‘/tmp/RtmpOqLyhq/downloaded_packages’
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 2 packages ahead of CRAN: sparsevctrs, clock
[ Finished: 2025-03-22 01:05:26 CET ]