[ Started: 2022-10-17 21:04:51 CEST ]
[ OmnipathR v3.4.7 for BioC-3.15 from https://github.com/saezlab/OmnipathR@RELEASE_3_15 ]
[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.15"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Old packages: 'OmnipathR'
trying URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/OmnipathR_3.4.7.tar.gz'
Content type 'application/x-gzip' length 3387708 bytes (3.2 MB)
==================================================
downloaded 3.2 MB

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2022-10-17 21:05:03] [INFO]    [OmnipathR] Setting up new cache directory `/home/omnipath/.cache/OmnipathR`.
[2022-10-17 21:05:03] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2022-10-17 21:05:03] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2022-10-17 21:05:03] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2022-10-17 21:05:03] [TRACE]   [OmnipathR] Pandoc version: `2.5`.
[2022-10-17 21:05:03] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2022-10-17 21:05:04] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2022-10-17 21:05:04] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2022-10-17 21:05:04] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2022-10-17 21:05:04] [TRACE]   [OmnipathR] Pandoc version: `2.5`.
[2022-10-17 21:05:04] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)

The downloaded source packages are in
	‘/tmp/RtmpwryeGW/downloaded_packages’

Skipping 2 packages ahead of CRAN: data.table, openssl
[ Finished: 2022-10-17 21:05:06 CEST ]