[ Started: 2023-07-04 18:36:17 CEST ]
[ OmnipathR v3.6.6 for BioC-3.16 from https://github.com/saezlab/OmnipathR@RELEASE_3_16 ]

* checking for file ‘./DESCRIPTION’ ... OK
* preparing ‘OmnipathR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-07-04 18:36:24] [INFO]    [OmnipathR] Setting up new cache directory `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:24] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Contains 1 files.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-07-04 18:36:24] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2023-07-04 18:36:24] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-07-04 18:36:25] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Contains 1 files.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-07-04 18:36:25] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2023-07-04 18:36:25] [TRACE]   [OmnipathR] Cache locked: FALSE
Error in base::serialize(base::as.list(base::getNamespace("OmnipathR"),  : 
  error writing to connection
Calls: <Anonymous> -> withCallingHandlers -> <Anonymous>
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpidnSPX/Rinst312aad2e27de17/OmnipathR’
      -----------------------------------
ERROR: package installation failed
[ Finished: 2023-07-04 18:36:25 CEST ]