[ Started: 2023-01-07 01:15:46 CET ]
[ OmnipathR v3.7.0 for BioC-3.17 from https://github.com/saezlab/OmnipathR@master ]
Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease
Hit:2 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease
Hit:3 http://security.ubuntu.com/ubuntu jammy-security InRelease
Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease
Reading package lists...
[1] "Libraries: " "/home/omnipath/local/R/4.2-3.17"
[3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library"
Warning message:
package ‘BiocCheck’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Reading package lists...
Building dependency tree...
Reading state information...
libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.7).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libssl-dev is already the newest version (3.0.2-0ubuntu1.7).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libglpk-dev is already the newest version (5.0-1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgmp3-dev is already the newest version (2:6.2.1+dfsg-3ubuntu1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.2).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
make is already the newest version (4.3-4.1build1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libicu-dev is already the newest version (70.1-2).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
pandoc is already the newest version (2.9.2.1-3ubuntu2).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libfontconfig1-dev is already the newest version (2.13.1-4.2ubuntu5).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libfreetype6-dev is already the newest version (2.11.1+dfsg-1ubuntu0.1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu9.2).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgdal-dev is already the newest version (3.4.1+dfsg-1build4).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
gdal-bin is already the newest version (3.4.1+dfsg-1build4).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgeos-dev is already the newest version (3.10.2-1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libglu1-mesa-dev is already the newest version (9.0.2-1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgsl-dev is already the newest version (2.7.1+dfsg-3).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
jags is already the newest version (4.3.0-3focal0).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libmpfr-dev is already the newest version (4.1.0-3build3).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libopenmpi-dev is already the newest version (4.1.2-2ubuntu1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libproj-dev is already the newest version (8.2.1-1).
The following packages were automatically installed and are no longer required:
gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10
libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 18 not to upgrade.
apt-get install -y libcurl4-openssl-dev apt-get install -y libssl-dev
0 0
apt-get install -y libglpk-dev apt-get install -y libgmp3-dev
0 0
apt-get install -y libxml2-dev apt-get install -y make
0 0
apt-get install -y libicu-dev apt-get install -y pandoc
0 0
apt-get install -y libfontconfig1-dev apt-get install -y libfreetype6-dev
0 0
apt-get install -y zlib1g-dev apt-get install -y libgdal-dev
0 0
apt-get install -y gdal-bin apt-get install -y libgeos-dev
0 0
apt-get install -y libglu1-mesa-dev apt-get install -y libgsl0-dev
0 0
apt-get install -y jags apt-get install -y libmpfr-dev
0 0
apt-get install -y libopenmpi-dev apt-get install -y libproj-dev
0 0
[ Finished: 2023-01-07 01:15:59 CET ]