[ Started: 2023-07-12 18:32:23 CEST ] [ OmnipathR v3.9.6 for BioC-3.17 from https://github.com/saezlab/OmnipathR@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" also installing the dependency ‘Matrix’ trying URL 'https://cran.uni-muenster.de/src/contrib/Matrix_1.6-0.tar.gz' Content type 'application/x-gzip' length 2058479 bytes (2.0 MB) ================================================== downloaded 2.0 MB trying URL 'https://cran.uni-muenster.de/src/contrib/dbplyr_2.3.3.tar.gz' Content type 'application/x-gzip' length 723072 bytes (706 KB) ================================================== downloaded 706 KB trying URL 'https://cran.uni-muenster.de/src/contrib/digest_0.6.33.tar.gz' Content type 'application/x-gzip' length 177801 bytes (173 KB) ================================================== downloaded 173 KB trying URL 'https://cran.uni-muenster.de/src/contrib/MatrixModels_0.5-2.tar.gz' Content type 'application/x-gzip' length 24659 bytes (24 KB) ================================================== downloaded 24 KB trying URL 'https://cran.uni-muenster.de/src/contrib/pkgload_1.3.2.1.tar.gz' Content type 'application/x-gzip' length 76728 bytes (74 KB) ================================================== downloaded 74 KB trying URL 'https://cran.uni-muenster.de/src/contrib/pROC_1.18.4.tar.gz' Content type 'application/x-gzip' length 439404 bytes (429 KB) ================================================== downloaded 429 KB trying URL 'https://cran.uni-muenster.de/src/contrib/Rcpp_1.0.11.tar.gz' Content type 'application/x-gzip' length 2994004 bytes (2.9 MB) ================================================== downloaded 2.9 MB trying URL 'https://cran.uni-muenster.de/src/contrib/readxl_1.4.3.tar.gz' Content type 'application/x-gzip' length 2093488 bytes (2.0 MB) ================================================== downloaded 2.0 MB trying URL 'https://cran.uni-muenster.de/src/contrib/rstudioapi_0.15.0.tar.gz' Content type 'application/x-gzip' length 115689 bytes (112 KB) ================================================== downloaded 112 KB trying URL 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz' Content type 'application/x-gzip' length 2476876 bytes (2.4 MB) ============ downloaded 609 KB Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz': status was 'Failed writing received data to disk/application' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘shiny’ failed trying URL 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz' Content type 'application/x-gzip' length 767955 bytes (749 KB) downloaded 7949 bytes Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz': status was 'Failed writing received data to disk/application' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘spatstat.geom’ failed trying URL 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz' Content type 'application/x-gzip' length 737357 bytes (720 KB) downloaded 7949 bytes Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz': status was 'Failed writing received data to disk/application' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘testthat’ failed trying URL 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz' Content type 'application/x-gzip' length 371065 bytes (362 KB) = downloaded 7949 bytes Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz': status was 'Failed writing received data to disk/application' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘usethis’ failed trying URL 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz' Content type 'application/x-gzip' length 272664 bytes (266 KB) = downloaded 7949 bytes Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz': status was 'Failed writing received data to disk/application' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘xml2’ failed Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : unable to create temporary directory ‘/tmp/RtmpRah0mi/file13510153fd589c’ Calls: update.packages -> install.packages In addition: Warning message: In dir.create(tmpd2) : cannot create dir '/tmp/RtmpRah0mi/file13510153fd589c', reason 'No space left on device' Execution halted [ Finished: 2023-07-12 18:32:27 CEST ]