[ Started: 2024-02-01 13:45:43 CET ]
[ OmnipathR v3.8.2 for BioC-3.17 from https://github.com/saezlab/OmnipathR@RELEASE_3_17 ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.17' is out-of-date; the current release version '3.18'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
biomaRt (2.58.1 -> 2.58.2) [CRAN]
Skipping 1 packages not available: dnet
Installing 1 packages: biomaRt
trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/biomaRt_2.58.2.tar.gz'
Content type 'application/x-gzip' length 670061 bytes (654 KB)
==================================================
downloaded 654 KB

* installing *source* package ‘biomaRt’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biomaRt)

The downloaded source packages are in
	‘/tmp/RtmpJLIfUI/downloaded_packages’
[ Finished: 2024-02-01 13:46:06 CET ]