[ Started: 2023-12-27 13:30:22 CET ]
[ OmnipathR v3.11.1 for BioC-3.18 from https://github.com/saezlab/OmnipathR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
metabolit... (NA -> 1.0.0) [CRAN]
R.matlab     (NA -> 3.7.0) [CRAN]
Installing 2 packages: metaboliteIDmapping, R.matlab
trying URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/metaboliteIDmapping_1.0.0.tar.gz'
Content type 'application/x-gzip' length 307248 bytes (300 KB)
==================================================
downloaded 300 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/R.matlab_3.7.0.tar.gz'
Content type 'application/x-gzip' length 109258 bytes (106 KB)
==================================================
downloaded 106 KB

* installing *source* package ‘metaboliteIDmapping’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
downloading 1 resources
retrieving 1 resource
loading from cache
** testing if installed package can be loaded from final location
loading from cache
** testing if installed package keeps a record of temporary installation path
* DONE (metaboliteIDmapping)
* installing *source* package ‘R.matlab’ ...
** package ‘R.matlab’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R.matlab)

The downloaded source packages are in
	‘/tmp/RtmpzaBnQk/downloaded_packages’
[ Finished: 2023-12-27 13:31:32 CET ]