[ Started: 2024-03-25 12:52:54 CET ]
[ OmnipathR v3.10.1 for BioC-3.18 from https://github.com/saezlab/OmnipathR@RELEASE_3_18 (b1b2bab 2023-10-25 17:47:10) ]

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Contains 44 files.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:02] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Contains 1 files.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.3-3.18/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-25 12:53:03] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)
[ Finished: 2024-03-25 12:53:03 CET ]