[ Started: 2024-05-13 15:40:34 CEST ]
[ OmnipathR v3.10.1 for BioC-3.18 from https://github.com/saezlab/OmnipathR@RELEASE_3_18 (b1b2bab 2023-10-25 17:47:10) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.18' is out-of-date; the current release version '3.19'
  is available with R version '4.4'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
Old packages: 'CARNIVAL'
trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/CARNIVAL_2.12.0.tar.gz'
Content type 'application/x-gzip' length 2146283 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

* installing *source* package ‘CARNIVAL’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CARNIVAL)

The downloaded source packages are in
	‘/tmp/RtmpmTHYdh/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages not available: dnet
Skipping 18 packages ahead of CRAN: farver, BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, graph, BiocFileCache, AnnotationDbi, supraHex, Rgraphviz, biomaRt, BiocStyle
[ Finished: 2024-05-13 15:40:50 CEST ]