[ Started: 2024-03-22 17:57:53 CET ]
[ OmnipathR v3.11.8 for BioC-3.19 from https://github.com/saezlab/OmnipathR@master (99a4f09 2024-03-22 11:55:42) ]

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Warning: OmnipathR.Rd:3: docType ‘_PACKAGE’ is unrecognized
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Contains 43 files.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:01] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Contains 1 files.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Pandoc version: `2.9.2.1`.
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-03-22 17:58:02] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)
[ Finished: 2024-03-22 17:58:02 CET ]