[ Started: 2024-08-26 22:40:03 CEST ] [ OmnipathR v3.12.3 for BioC-3.19 from https://git.bioconductor.org/packages/OmnipathR@RELEASE_3_19 (7085ced 2024-08-16 13:11:39) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.19 (BiocManager 1.30.24), R 4.4.1 (2024-06-14) 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.19 (BiocManager 1.30.24), R 4.4.1 (2024-06-14) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 6 packages ahead of CRAN: BiocGenerics, curl, graph, supraHex, Rgraphviz, BiocStyle [ Finished: 2024-08-26 22:40:12 CEST ]