[ Started: 2024-09-23 15:35:10 CEST ]
[ OmnipathR v3.13.25 for BioC-3.20 from https://github.com/saezlab/OmnipathR@master (d07da8c 2024-09-07 17:02:07) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Old packages: 'CARNIVAL'
trying URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz'
Error in download.file(url, destfile, method, mode = "wb", ...) : 
  cannot open URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 0 != reported length 1033
2: In download.file(url, destfile, method, mode = "wb", ...) :
  cannot open URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz': HTTP status was '504 Gateway Timeout'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘CARNIVAL’ failed
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Old packages: 'CARNIVAL'
trying URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz'
Error in download.file(url, destfile, method, mode = "wb", ...) : 
  cannot open URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz'
In addition: Warning messages:
1: package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
2: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 0 != reported length 1033
3: In download.file(url, destfile, method, mode = "wb", ...) :
  cannot open URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.15.0.tar.gz': HTTP status was '504 Gateway Timeout'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘CARNIVAL’ failed

Skipping 5 packages ahead of CRAN: BiocGenerics, graph, supraHex, Rgraphviz, BiocStyle
[ Finished: 2024-09-23 15:38:37 CEST ]