[ Started: 2025-01-25 12:21:51 CET ]
[ OmnipathR v3.15.1 for BioC-3.20 from https://github.com/saezlab/OmnipathR@master (4ffd9ec 2024-11-07 16:20:19) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Old packages: 'CARNIVAL'
trying URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/CARNIVAL_2.16.0.tar.gz'
Content type 'application/x-gzip' length 2151776 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

* installing *source* package ‘CARNIVAL’ ...
** package ‘CARNIVAL’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CARNIVAL)

The downloaded source packages are in
	‘/tmp/RtmpC8pqsu/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 5 packages ahead of CRAN: BiocGenerics, graph, supraHex, Rgraphviz, BiocStyle
[ Finished: 2025-01-25 12:22:05 CET ]