[ Started: 2025-02-27 00:34:59 CET ]
[ OmnipathR v3.14.0 for BioC-3.20 from https://git.bioconductor.org/packages/OmnipathR@RELEASE_3_20 (3c7d7f1 2024-10-29 10:41:00) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Old packages: 'tinytex'
trying URL 'https://cloud.r-project.org/src/contrib/tinytex_0.56.tar.gz'
Content type 'application/x-gzip' length 35918 bytes (35 KB)
==================================================
downloaded 35 KB

* installing *source* package ‘tinytex’ ...
** package ‘tinytex’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tinytex)

The downloaded source packages are in
	‘/tmp/RtmpQGWpKV/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 6 packages ahead of CRAN: tinytex, BiocGenerics, graph, supraHex, Rgraphviz, BiocStyle
[ Finished: 2025-02-27 00:35:11 CET ]