[ Started: 2025-11-19 04:06:25 CET ]
[ OmnipathR v3.19.2 for BioC-3.22 from https://github.com/saezlab/OmnipathR@devel (0f1c5d0 2025-11-17 18:47:44) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.27), R 4.5.1 (2025-06-13)
Old packages: 'CARNIVAL'
trying URL 'https://bioconductor.org/packages/3.22/bioc/src/contrib/CARNIVAL_2.20.0.tar.gz'
Content type 'application/x-gzip' length 2151787 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

* installing *source* package ‘CARNIVAL’ ...
** this is package ‘CARNIVAL’ version ‘2.20.0’
** package ‘CARNIVAL’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CARNIVAL)

The downloaded source packages are in
	‘/tmp/RtmpK40CrK/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.27), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 48 packages not available: BiocManager, yaml, rmarkdown, knitr, bookdown, testthat, smoof, sigmajs, R.matlab, ParamHelpers, parallelMap, mlrMBO, gprofiler2, ggraph, ggplot2, zip, xml2, XML, withr, vctrs, tidyselect, tidyr, tibble, stringr, stringi, sessioninfo, rvest, R.utils, RSQLite, rlang, readxl, readr, rappdirs, purrr, progress, magrittr, lubridate, logger, later, jsonlite, igraph, httr2, fs, dplyr, digest, curl, crayon, checkmate
[ Finished: 2025-11-19 04:06:35 CET ]