[ Started: 2026-03-25 22:28:12 CET ]
[ OmnipathR v3.19.12 for BioC-3.23 from https://github.com/saezlab/OmnipathR@devel (b87b4dd 2026-03-25 22:05:11) ]

Loading required package: BiocCheck
Registered S3 method overwritten by 'bit64':
  method          from 
  print.bitstring tools
-- Installing OmnipathR --------------------------------------------------------
v Package installed successfully
-- OmnipathR session metadata --------------------------------------------------
> sourceDir: /tmp/RtmphqrtfB/filecc6d513f4287f/OmnipathR
> BiocVersion: 3.23
> Package: OmnipathR
> PackageVersion: 3.19.12
> BiocCheckDir: /mnt/disk0/build/bioc-check/omnipathr/bioc-3.23/2026-03-25_2217/OmnipathR/OmnipathR.BiocCheck
> BiocCheckVersion: 1.47.20
> sourceDir: /tmp/RtmphqrtfB/filecc6d513f4287f/OmnipathR
> installDir: /tmp/RtmphqrtfB/filecc6d5daabf7e
> isTarBall: TRUE
> platform: unix
-- Running BiocCheck on OmnipathR ----------------------------------------------
* Checking for deprecated package usage...
Error while performing HEAD request.
   Proceeding without cache information.
Error in if (identical(nrow(bquery), 1L) && bfcneedsupdate(bfc, bquery[["rid"]])) bfcdownload(x = bfc,  : 
  missing value where TRUE/FALSE needed
Calls: BiocCheck ... getAllDeprecatedPkgs -> get_deprecated_status -> get_status_file_cache
Execution halted
[ Finished: 2026-03-25 22:28:59 CET ]