[ Started: 2022-04-23 18:23:38 ]
GenomeInfoDb (1.31.7       -> 1.31.10     ) [CRAN]
parallelly   (1.31.0       -> 1.31.1      ) [CRAN]
BiocManager  (1.30.16      -> 1.30.17     ) [CRAN]
BiocFileC... (2.3.4        -> 2.3.5       ) [CRAN]
decoupleR    (1544ea478... -> 5b603fb32...) [GitHub]
Installing 4 packages: GenomeInfoDb, parallelly, BiocManager, BiocFileCache
trying URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/GenomeInfoDb_1.31.10.tar.gz'
Content type 'application/x-gzip' length 3452600 bytes (3.3 MB)
==================================================
downloaded 3.3 MB

trying URL 'https://cloud.r-project.org/src/contrib/parallelly_1.31.1.tar.gz'
Content type 'application/x-gzip' length 121211 bytes (118 KB)
==================================================
downloaded 118 KB

trying URL 'https://cloud.r-project.org/src/contrib/BiocManager_1.30.17.tar.gz'
Content type 'application/x-gzip' length 287948 bytes (281 KB)
==================================================
downloaded 281 KB

trying URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/BiocFileCache_2.3.5.tar.gz'
Content type 'application/x-gzip' length 297786 bytes (290 KB)
==================================================
downloaded 290 KB

* installing *source* package ‘GenomeInfoDb’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomeInfoDb)
* installing *source* package ‘parallelly’ ...
** package ‘parallelly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parallelly)
* installing *source* package ‘BiocManager’ ...
** package ‘BiocManager’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocManager)
* installing *source* package ‘BiocFileCache’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocFileCache)

The downloaded source packages are in
	‘/tmp/RtmpJjzGl4/downloaded_packages’
Downloading GitHub repo saezlab/decoupleR@HEAD

* checking for file ‘/tmp/RtmpJjzGl4/remotes3437691dd6768c/saezlab-decoupleR-5b603fb/DESCRIPTION’ ... OK
* preparing ‘decoupleR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘decoupleR_2.1.11.tar.gz’

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
[ Finished: 2022-04-23 18:24:30 ]