[ Started: 2023-01-18 01:45:15 CET ]
[ progeny v1.17.3 for BioC-3.16 from https://github.com/saezlab/progeny@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 Patched (2022-11-10
  r83330)
Old packages: 'formatR'
trying URL 'https://cloud.r-project.org/src/contrib/formatR_1.14.tar.gz'
Content type 'application/x-gzip' length 96077 bytes (93 KB)
==================================================
downloaded 93 KB

* installing *source* package ‘formatR’ ...
** package ‘formatR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (formatR)

The downloaded source packages are in
	‘/tmp/RtmpW02Tl7/downloaded_packages’

Skipping 3 packages ahead of CRAN: evaluate, formatR, bookdown
[ Finished: 2023-01-18 01:45:26 CET ]